在阅读文献的过程中发现一些纯生信的文章会在一些高分杂志中共享代码,主要集中在Cell Reports,Nature Communications和Nature Medicine等杂志;代码类型包括,箱图,热图,韦恩图,散点图,基因突变全景图,小提琴图,相关性热图等;
在这里收集了10篇Nature Communications多组学文章代码分享给大家,如果大家需要下面的10篇文章,请在公众号内回复NC文献进行获取网盘链接。
注:不是所有的截图都是有代码的,但是大部分都是有的;因为发现之前整理的一篇的代码是Python的,所以就拿了一篇偏单细胞的拿来凑数了;
1.Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs
DOI号:10.1038/s41467-019-10887-6代码:/yuchaojiang/damage_repair
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2.Association of imputed prostate cancer transcriptome with disease risk reveals novel mechanisms
DOI号:10.1038/s41467-019-10808-7代码:/Wittelab/PrCa_TWAS
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3.Clonal selection confers distinct evolutionary trajectories in BRAF-driven cancers
DOI号:10.1038/s41467-019-13161-x代码:https://static-/esm/art%3A10.1038%2Fs41467-019-13161-x/MediaObjects/41467__13161_MOESM6_ESM.zip
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prehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types
DOI号:10.1038/s41467-019-11415-2代码:/katharineyu/TCGA_CCLE_paper
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5.Evaluating cell lines as models for metastatic breast cancer through integrative analysis of genomic data
DOI号:10.1038/s41467-019-10148-6代码:/Bin-Chen-Lab/MetaBreaCellLine
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6.Metabolic landscape of the tumor microenvironment at single cell resolution
DOI号:10.1038/s41467-019-11738-0代码:/LocasaleLab/Single-Cell-Metabolic-Landscape
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7.Multi-omic tumor data reveal diversity of molecular mechanisms that correlate with survival
DOI号:10.1038/s41467-018-06921-8代码:/danro9685/CIMLR
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8.Pan-cancer deconvolution of tumour composition using DNA methylation
DOI号:10.1038/s41467-018-05570-1代码:/d/forum/methyldeconvolution
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9.Proteogenomic landscape of squamous cell lung cancer
DOI号:10.1038/s41467-019-11452-x代码:/pstew/proteogenomics_scc
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10.Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer
DOI号:10.1038/s41467-019-08302-1代码:/clark-lab/Replication-Timing
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排版:Robin
校对:Robin